
Microcosm: E. coli and the New Science of Life

As E. coli runs out of its essential nutrients, its ribosomes get sloppy, producing misshapen protein that attacks other molecules. The catastrophe can ripple out across the entire microbe. To continue to grow under such stress would be suicidal, like driving a car over a cliff. Instead, E. coli slams on the brakes. In a matter of seconds it stops
... See moreCarl Zimmer • Microcosm: E. coli and the New Science of Life
That’s a lot of time and energy for a microbe to invest. The investment may pay off or it may be a waste of effort—the lactose may disappear quickly or a more energy-rich sugar may turn up.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
But E. coli has to pay a price for this weaponry. It has to use energy to make colicins and antidotes, which are particularly big as bacterial molecules go. A new colicin may be even deadlier than its predecessor, but it may also become a drain on a microbe.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
operon meaning a set of genes that are all regulated by the same switches.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
E. coli builds chemical weapons. Known as colicins, these deadly molecules kill in many ways. Some pierce the microbe’s membrane like a spear, forcing its innards to spill out. Others block E. coli from building new proteins. Others destroy DNA.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
when the temperature is cool, E. coli is constantly reading the gene for sigma 32 and making RNA copies. But at normal temperatures the RNA folds in on itself, and so E. coli cannot use it to make a protein. At normal temperatures the microbe is loaded with sigma 32 RNA but no actual sigma 32 protein.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
Enzymes are actually not all that finely tuned. An enzyme that can slice up one molecule very efficiently may slice up other kinds of molecules, too, albeit more slowly and clumsily.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
If you want to add a toggle switch to your particular circuit, you can search for it on the BioBricks Web site, download the DNA sequence, order the corresponding fragments of DNA from a biotech firm, and insert them in E. coli.
Carl Zimmer • Microcosm: E. coli and the New Science of Life
It grows looming towers, broad